IL_9SS5_030

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_030 not in the Motif Atlas

Geometric match to IL_8B0X_094

Geometric discrepancy: 0.1703

The information below is about IL_8B0X_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9SS5|1|D2|G|875
9SS5|1|D2|C|876
9SS5|1|D2|A|877
9SS5|1|D2|A|878
9SS5|1|D2|G|879
*
9SS5|1|D2|C|898
9SS5|1|D2|A|899
9SS5|1|D2|A|900
9SS5|1|D2|C|901
9SS5|1|D2|C|902

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L16