IL_9SS5_039
3D structure
- PDB id
- 9SS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit in rimM-KO with RsfS (+H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS5_039 not in the Motif Atlas
- Geometric match to IL_8B0X_103
- Geometric discrepancy: 0.1104
- The information below is about IL_8B0X_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9SS5|1|D2|G|1038
9SS5|1|D2|A|1039
9SS5|1|D2|A|1040
9SS5|1|D2|G|1041
*
9SS5|1|D2|C|1114
9SS5|1|D2|G|1115
9SS5|1|D2|G|1116
9SS5|1|D2|C|1117
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B9
- Large ribosomal subunit protein bL36A
- Chain BF
- Large ribosomal subunit protein uL6
- Chain BP
- 50S ribosomal protein L16
- Chain BY
- Large ribosomal subunit protein bL25
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