IL_9SS5_063

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_063 not in the Motif Atlas

Geometric match to IL_8B0X_180

Geometric discrepancy: 0.0749

The information below is about IL_8B0X_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

9SS5|1|D2|G|1666
9SS5|1|D2|G|1667
9SS5|1|D2|A|1668
9SS5|1|D2|A|1669
9SS5|1|D2|C|1670
9SS5|1|D2|U|1671
9SS5|1|D2|A|1672
9SS5|1|D2|G|1673
9SS5|1|D2|G|1674
*
9SS5|1|D2|C|1990
9SS5|1|D2|U|1991
9SS5|1|D2|G|1992
9SS5|1|D2|U|1993
9SS5|1|D2|C|1994

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L3

Chain BN

Large ribosomal subunit protein uL14