IL_9SS5_077
3D structure
- PDB id
- 9SS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit in rimM-KO with RsfS (+H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 9SS5|1|D2|A|1938, 9SS5|1|D2|U|1944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS5_077 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.2857
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
9SS5|1|D2|C|1934
9SS5|1|D2|G|1935
9SS5|1|D2|A|1936
9SS5|1|D2|A|1937
9SS5|1|D2|A|1938
9SS5|1|D2|U|1939
9SS5|1|D2|U|1940
9SS5|1|D2|C|1941
9SS5|1|D2|C|1942
9SS5|1|D2|U|1943
9SS5|1|D2|U|1944
9SS5|1|D2|G|1945
*
9SS5|1|D2|C|1961
9SS5|1|D2|C|1962
9SS5|1|D2|U|1963
9SS5|1|D2|G|1964
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
Coloring options: