IL_9SS5_084

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAG*CCUUUAAUG

Length

27 nucleotides

Bulged bases

9SS5|1|D2|U|2111, 9SS5|1|D2|G|2116, 9SS5|1|D2|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS5|1|D2|C|2103
9SS5|1|D2|C|2104
9SS5|1|D2|U|2105
9SS5|1|D2|U|2106
9SS5|1|D2|G|2107
9SS5|1|D2|A|2108
9SS5|1|D2|U|2109
9SS5|1|D2|G|2110
9SS5|1|D2|U|2111
9SS5|1|D2|G|2112
9SS5|1|D2|U|2113
9SS5|1|D2|A|2114
9SS5|1|D2|G|2115
9SS5|1|D2|G|2116
9SS5|1|D2|A|2117
9SS5|1|D2|U|2118
9SS5|1|D2|A|2119
9SS5|1|D2|G|2120
*
9SS5|1|D2|C|2178
9SS5|1|D2|C|2179
9SS5|1|D2|U|2180
9SS5|1|D2|U|2181
9SS5|1|D2|U|2182
9SS5|1|D2|A|2183
9SS5|1|D2|A|2184
9SS5|1|D2|U|2185
9SS5|1|D2|G|2186

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BI

Large ribosomal subunit protein bL9