IL_9SS5_085

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

9SS5|1|D2|U|2132, 9SS5|1|D2|A|2158, 9SS5|1|D2|C|2161, 9SS5|1|D2|U|2167, 9SS5|1|D2|A|2171, 9SS5|1|D2|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS5|1|D2|G|2124
9SS5|1|D2|G|2125
9SS5|1|D2|A|2126
9SS5|1|D2|G|2127
9SS5|1|D2|G|2128
9SS5|1|D2|C|2129
9SS5|1|D2|U|2130
9SS5|1|D2|U|2131
9SS5|1|D2|U|2132
9SS5|1|D2|G|2133
9SS5|1|D2|A|2134
9SS5|1|D2|A|2135
9SS5|1|D2|G|2136
9SS5|1|D2|U|2137
*
9SS5|1|D2|A|2154
9SS5|1|D2|U|2155
9SS5|1|D2|G|2156
9SS5|1|D2|G|2157
9SS5|1|D2|A|2158
9SS5|1|D2|G|2159
9SS5|1|D2|C|2160
9SS5|1|D2|C|2161
9SS5|1|D2|G|2162
9SS5|1|D2|A|2163
9SS5|1|D2|C|2164
9SS5|1|D2|C|2165
9SS5|1|D2|U|2166
9SS5|1|D2|U|2167
9SS5|1|D2|G|2168
9SS5|1|D2|A|2169
9SS5|1|D2|A|2170
9SS5|1|D2|A|2171
9SS5|1|D2|U|2172
9SS5|1|D2|A|2173
9SS5|1|D2|C|2174

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains