IL_9SS5_088

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

9SS5|1|D2|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_088 not in the Motif Atlas

Geometric match to IL_9AXU_122

Geometric discrepancy: 0.3953

The information below is about IL_9AXU_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9SS5|1|D2|U|2401
9SS5|1|D2|U|2402
9SS5|1|D2|C|2403
*
9SS5|1|D2|G|2414
9SS5|1|D2|G|2415

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B6

Large ribosomal subunit protein bL33

Chain B8

Large ribosomal subunit protein bL35

Chain BO

Large ribosomal subunit protein uL15