IL_9SS5_108

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_108 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.368

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9SS5|1|D2|U|2847
9SS5|1|D2|G|2848
9SS5|1|D2|U|2849
9SS5|1|D2|A|2850
9SS5|1|D2|A|2851
9SS5|1|D2|G|2852
*
9SS5|1|D2|U|2865
9SS5|1|D2|U|2866
9SS5|1|D2|G|2867
9SS5|1|D2|A|2868
9SS5|1|D2|G|2869

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BQ

Large ribosomal subunit protein bL17

Chain BS

Large ribosomal subunit protein bL19