IL_9SS6_012

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9SS6|1|D1|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_012 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.4603

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9SS6|1|D1|G|147
9SS6|1|D1|G|148
9SS6|1|D1|A|149
9SS6|1|D1|U|150
9SS6|1|D1|A|151
9SS6|1|D1|A|152
9SS6|1|D1|C|153
*
9SS6|1|D1|G|168
9SS6|1|D1|C|169
9SS6|1|D1|U|170
9SS6|1|D1|A|171
9SS6|1|D1|A|172
9SS6|1|D1|U|173
9SS6|1|D1|A|174
9SS6|1|D1|C|175

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AS

Small ribosomal subunit protein bS20