IL_9SS6_022

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9SS6|1|D1|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_022 not in the Motif Atlas

Geometric match to IL_8B0X_021

Geometric discrepancy: 0.0987

The information below is about IL_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9SS6|1|D1|G|446
9SS6|1|D1|G|447
9SS6|1|D1|A|448
9SS6|1|D1|G|449
9SS6|1|D1|G|450
*
9SS6|1|D1|C|483
9SS6|1|D1|G|484
9SS6|1|D1|U|485
9SS6|1|D1|U|486
9SS6|1|D1|A|487
9SS6|1|D1|C|488

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain AO

Small ribosomal subunit protein bS16