IL_9SS6_028

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_028 not in the Motif Atlas

Homologous match to IL_6CZR_407

Geometric discrepancy: 0.2202

The information below is about IL_6CZR_407

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.5

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9SS6|1|D1|U|594
9SS6|1|D1|A|595
9SS6|1|D1|A|596
*
9SS6|1|D1|U|644
9SS6|1|D1|G|645

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AG

Small ribosomal subunit protein uS8

Chain AP

Small ribosomal subunit protein uS17