IL_9SS6_046

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9SS6|1|D1|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_046 not in the Motif Atlas

Homologous match to IL_6CZR_154

Geometric discrepancy: 0.1937

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9SS6|1|D1|U|1052
9SS6|1|D1|G|1053
9SS6|1|D1|C|1054
9SS6|1|D1|A|1055
9SS6|1|D1|U|1056
*
9SS6|1|D1|A|1204
9SS6|1|D1|U|1205
9SS6|1|D1|G|1206

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AB

Small ribosomal subunit protein uS3

Chain AI

Small ribosomal subunit protein uS10

Chain AM

Small ribosomal subunit protein uS14