IL_9SS6_055

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_055 not in the Motif Atlas

Geometric match to IL_8B0X_055

Geometric discrepancy: 0.2011

The information below is about IL_8B0X_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9SS6|1|D1|C|1259
9SS6|1|D1|G|1260
9SS6|1|D1|A|1261
9SS6|1|D1|C|1262
9SS6|1|D1|C|1263
*
9SS6|1|D1|G|1272
9SS6|1|D1|C|1273
9SS6|1|D1|A|1274
9SS6|1|D1|A|1275
9SS6|1|D1|G|1276

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AM

Small ribosomal subunit protein uS14

Chain AR

Small ribosomal subunit protein uS19