IL_9SS6_056

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_056 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1911

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D1|C|1303
9SS6|1|D1|G|1304
9SS6|1|D1|G|1305
9SS6|1|D1|A|1306
9SS6|1|D1|U|1307
9SS6|1|D1|U|1308
*
9SS6|1|D1|A|1329
9SS6|1|D1|U|1330
9SS6|1|D1|G|1331
9SS6|1|D1|A|1332
9SS6|1|D1|A|1333
9SS6|1|D1|G|1334

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AL

Small ribosomal subunit protein uS13