IL_9SS6_057

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9SS6|1|D1|C|1400, 9SS6|1|D1|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_057 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1442

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9SS6|1|D1|C|1399
9SS6|1|D1|C|1400
9SS6|1|D1|G|1401
*
9SS6|1|D1|C|1501
9SS6|1|D1|A|1502
9SS6|1|D1|A|1503
9SS6|1|D1|G|1504

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains