IL_9SS6_074

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_074 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.3124

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9SS6|1|D2|C|274
9SS6|1|D2|C|275
9SS6|1|D2|U|276
9SS6|1|D2|G|277
9SS6|1|D2|A|278
9SS6|1|D2|A|279
9SS6|1|D2|U|280
9SS6|1|D2|C|281
*
9SS6|1|D2|G|359
9SS6|1|D2|U|360
9SS6|1|D2|G|361
9SS6|1|D2|A|362
9SS6|1|D2|G|363

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains