IL_9SS6_079

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_079 not in the Motif Atlas

Homologous match to IL_7A0S_013

Geometric discrepancy: 0.1989

The information below is about IL_7A0S_013

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9SS6|1|D2|U|606
9SS6|1|D2|U|607
9SS6|1|D2|A|608
9SS6|1|D2|A|609
9SS6|1|D2|C|610
*
9SS6|1|D2|G|618
9SS6|1|D2|G|619
9SS6|1|D2|G|620
9SS6|1|D2|A|621
9SS6|1|D2|G|622

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BO

Large ribosomal subunit protein uL15