IL_9SS6_086

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9SS6|1|D2|G|776, 9SS6|1|D2|A|788, 9SS6|1|D2|A|789, 9SS6|1|D2|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_086 not in the Motif Atlas

Geometric match to IL_8B0X_085

Geometric discrepancy: 0.0411

The information below is about IL_8B0X_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9SS6|1|D2|G|775
9SS6|1|D2|G|776
9SS6|1|D2|G|777
*
9SS6|1|D2|C|787
9SS6|1|D2|A|788
9SS6|1|D2|A|789
9SS6|1|D2|U|790
9SS6|1|D2|C|791

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BB

Large ribosomal subunit protein uL2

Chain BV

Large ribosomal subunit protein uL22