IL_9SS6_097

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

9SS6|1|D2|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_097 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.1388

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

9SS6|1|D2|C|994
9SS6|1|D2|C|995
9SS6|1|D2|A|996
*
9SS6|1|D2|U|1159
9SS6|1|D2|G|1160

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B3

Large ribosomal subunit protein uL30

Chain BM

Large ribosomal subunit protein uL13

Chain BT

Large ribosomal subunit protein bL20

Chain BU

Large ribosomal subunit protein bL21