IL_9SS6_108

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9SS6|1|D2|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_108 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1207

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9SS6|1|D2|C|1196
9SS6|1|D2|G|1197
9SS6|1|D2|U|1198
*
9SS6|1|D2|A|1247
9SS6|1|D2|G|1248
9SS6|1|D2|U|1249
9SS6|1|D2|G|1250

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BO

Large ribosomal subunit protein uL15

Chain BT

Large ribosomal subunit protein bL20