IL_9SS6_112

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_112 not in the Motif Atlas

Geometric match to IL_9E6Q_008

Geometric discrepancy: 0.1097

The information below is about IL_9E6Q_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

9SS6|1|D2|G|1310
9SS6|1|D2|G|1311
9SS6|1|D2|U|1312
9SS6|1|D2|U|1313
*
9SS6|1|D2|A|1603
9SS6|1|D2|C|1604

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BW

Large ribosomal subunit protein uL23