IL_9SS6_113

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9SS6|1|D2|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_113 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2324

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9SS6|1|D2|C|1319
9SS6|1|D2|C|1320
9SS6|1|D2|A|1321
9SS6|1|D2|A|1322
9SS6|1|D2|C|1323
*
9SS6|1|D2|G|1331
9SS6|1|D2|G|1332
9SS6|1|D2|G|1333

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BV

Large ribosomal subunit protein uL22