IL_9SS6_122

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_122 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5894

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9SS6|1|D2|U|1474
9SS6|1|D2|G|1475
9SS6|1|D2|U|1476
9SS6|1|D2|A|1477
9SS6|1|D2|G|1478
*
9SS6|1|D2|U|1513
9SS6|1|D2|G|1514
9SS6|1|D2|A|1515
9SS6|1|D2|G|1516
9SS6|1|D2|G|1517

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains