IL_9SS6_124

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

9SS6|1|D2|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_124 not in the Motif Atlas

Geometric match to IL_4V9F_098

Geometric discrepancy: 0.3383

The information below is about IL_4V9F_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9SS6|1|D2|C|1489
9SS6|1|D2|A|1490
9SS6|1|D2|G|1491
*
9SS6|1|D2|C|1499
9SS6|1|D2|G|1500

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2