IL_9SS6_125

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_125 not in the Motif Atlas

Geometric match to IL_8B0X_122

Geometric discrepancy: 0.1099

The information below is about IL_8B0X_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9SS6|1|D2|C|1526
9SS6|1|D2|G|1527
9SS6|1|D2|A|1528
9SS6|1|D2|G|1529
*
9SS6|1|D2|U|1542
9SS6|1|D2|G|1543
9SS6|1|D2|A|1544
9SS6|1|D2|A|1545
9SS6|1|D2|G|1546

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains