IL_9SS6_129

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_129 not in the Motif Atlas

Geometric match to IL_8B0X_180

Geometric discrepancy: 0.0575

The information below is about IL_8B0X_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9SS6|1|D2|G|1666
9SS6|1|D2|G|1667
9SS6|1|D2|A|1668
9SS6|1|D2|A|1669
9SS6|1|D2|C|1670
9SS6|1|D2|U|1671
9SS6|1|D2|A|1672
9SS6|1|D2|G|1673
9SS6|1|D2|G|1674
*
9SS6|1|D2|C|1990
9SS6|1|D2|U|1991
9SS6|1|D2|G|1992
9SS6|1|D2|U|1993
9SS6|1|D2|C|1994

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L3

Chain BN

Large ribosomal subunit protein uL14