IL_9SS6_140

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_140 not in the Motif Atlas

Geometric match to IL_8B0X_136

Geometric discrepancy: 0.0919

The information below is about IL_8B0X_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9SS6|1|D2|U|1864
9SS6|1|D2|U|1865
9SS6|1|D2|A|1866
9SS6|1|D2|G|1867
*
9SS6|1|D2|C|1874
9SS6|1|D2|G|1875
9SS6|1|D2|A|1876
9SS6|1|D2|A|1877
9SS6|1|D2|G|1878

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL1