IL_9SS6_144

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9SS6|1|D2|C|2055, 9SS6|1|D2|U|2613, 9SS6|1|D2|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_144 not in the Motif Atlas

Geometric match to IL_8B0X_140

Geometric discrepancy: 0.069

The information below is about IL_8B0X_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

9SS6|1|D2|A|2054
9SS6|1|D2|C|2055
9SS6|1|D2|G|2056
*
9SS6|1|D2|C|2612
9SS6|1|D2|U|2613
9SS6|1|D2|A|2614
9SS6|1|D2|U|2615

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BC

50S ribosomal protein L3

Chain BV

Large ribosomal subunit protein uL22