IL_9SS6_148

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_148 not in the Motif Atlas

Homologous match to IL_7A0S_078

Geometric discrepancy: 0.408

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9SS6|1|D2|U|2085
9SS6|1|D2|U|2086
9SS6|1|D2|G|2087
*
9SS6|1|D2|C|2232
9SS6|1|D2|U|2233
9SS6|1|D2|G|2234

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28

Chain BB

Large ribosomal subunit protein uL2