IL_9SS6_150

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUGUGUAGGAUAG*CCUU

Length

17 nucleotides

Bulged bases

9SS6|1|D2|U|2111, 9SS6|1|D2|G|2116, 9SS6|1|D2|A|2117, 9SS6|1|D2|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D2|A|2108
9SS6|1|D2|U|2109
9SS6|1|D2|G|2110
9SS6|1|D2|U|2111
9SS6|1|D2|G|2112
9SS6|1|D2|U|2113
9SS6|1|D2|A|2114
9SS6|1|D2|G|2115
9SS6|1|D2|G|2116
9SS6|1|D2|A|2117
9SS6|1|D2|U|2118
9SS6|1|D2|A|2119
9SS6|1|D2|G|2120
*
9SS6|1|D2|C|2178
9SS6|1|D2|C|2179
9SS6|1|D2|U|2180
9SS6|1|D2|U|2181

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL1