IL_9SS6_151

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

9SS6|1|D2|U|2130, 9SS6|1|D2|U|2132, 9SS6|1|D2|G|2133, 9SS6|1|D2|G|2157, 9SS6|1|D2|U|2166, 9SS6|1|D2|G|2168, 9SS6|1|D2|A|2171, 9SS6|1|D2|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D2|G|2124
9SS6|1|D2|G|2125
9SS6|1|D2|A|2126
9SS6|1|D2|G|2127
9SS6|1|D2|G|2128
9SS6|1|D2|C|2129
9SS6|1|D2|U|2130
9SS6|1|D2|U|2131
9SS6|1|D2|U|2132
9SS6|1|D2|G|2133
9SS6|1|D2|A|2134
9SS6|1|D2|A|2135
9SS6|1|D2|G|2136
9SS6|1|D2|U|2137
*
9SS6|1|D2|A|2154
9SS6|1|D2|U|2155
9SS6|1|D2|G|2156
9SS6|1|D2|G|2157
9SS6|1|D2|A|2158
9SS6|1|D2|G|2159
9SS6|1|D2|C|2160
9SS6|1|D2|C|2161
9SS6|1|D2|G|2162
9SS6|1|D2|A|2163
9SS6|1|D2|C|2164
9SS6|1|D2|C|2165
9SS6|1|D2|U|2166
9SS6|1|D2|U|2167
9SS6|1|D2|G|2168
9SS6|1|D2|A|2169
9SS6|1|D2|A|2170
9SS6|1|D2|A|2171
9SS6|1|D2|U|2172
9SS6|1|D2|A|2173
9SS6|1|D2|C|2174

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL1