IL_9SS6_161

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9SS6|1|D2|G|2576, 9SS6|1|D2|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_161 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1235

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

9SS6|1|D2|C|2510
9SS6|1|D2|U|2511
9SS6|1|D2|C|2512
*
9SS6|1|D2|G|2574
9SS6|1|D2|C|2575
9SS6|1|D2|G|2576
9SS6|1|D2|A|2577
9SS6|1|D2|G|2578

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BC

50S ribosomal protein L3