IL_9SS6_172

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

9SS6|1|D2|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_172 not in the Motif Atlas

Homologous match to IL_7A0S_099

Geometric discrepancy: 0.1891

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

9SS6|1|D2|G|2838
9SS6|1|D2|G|2839
*
9SS6|1|D2|U|2878
9SS6|1|D2|A|2879
9SS6|1|D2|C|2880

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BQ

Large ribosomal subunit protein bL17