IL_9SX2_011

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SX2_011 not in the Motif Atlas

Geometric match to IL_8B0X_011

Geometric discrepancy: 0.0657

The information below is about IL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

9SX2|1|A|G|144
9SX2|1|A|G|145
9SX2|1|A|G|146
*
9SX2|1|A|C|176
9SX2|1|A|G|177
9SX2|1|A|C|178

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20