IL_9SX2_033
3D structure
- PDB id
- 9SX2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S Doxycycline Bound E. coli Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SX2_033 not in the Motif Atlas
- Homologous match to IL_6CZR_409
- Geometric discrepancy: 0.1251
- The information below is about IL_6CZR_409
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9SX2|1|A|A|673
9SX2|1|A|G|674
9SX2|1|A|A|675
9SX2|1|A|A|676
9SX2|1|A|U|677
*
9SX2|1|A|G|713
9SX2|1|A|G|714
9SX2|1|A|A|715
9SX2|1|A|A|716
9SX2|1|A|U|717
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein bS6
- Chain K
- Small ribosomal subunit protein uS11
- Chain R
- Small ribosomal subunit protein bS18
- Chain U
- Small ribosomal subunit protein bS21
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