IL_9SYH_021
3D structure
- PDB id
- 9SYH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome from deltaRlmE strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.89 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 9SYH|1|A|U|485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SYH_021 not in the Motif Atlas
- Geometric match to IL_8B0X_021
- Geometric discrepancy: 0.0558
- The information below is about IL_8B0X_021
- Detailed Annotation
- tWW-tWH-tHS
- Broad Annotation
- tWW-tWH-tHS
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9SYH|1|A|G|446
9SYH|1|A|G|447
9SYH|1|A|A|448
9SYH|1|A|G|449
9SYH|1|A|G|450
*
9SYH|1|A|C|483
9SYH|1|A|G|484
9SYH|1|A|U|485
9SYH|1|A|U|486
9SYH|1|A|A|487
9SYH|1|A|C|488
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain P
- Small ribosomal subunit protein bS16
Coloring options: