IL_9SYH_140

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

9SYH|1|a|A|1938, 9SYH|1|a|U|1944, 9SYH|1|a|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYH|1|a|C|1934
9SYH|1|a|G|1935
9SYH|1|a|A|1936
9SYH|1|a|A|1937
9SYH|1|a|A|1938
9SYH|1|a|5MU|1939
9SYH|1|a|U|1940
9SYH|1|a|C|1941
9SYH|1|a|C|1942
9SYH|1|a|U|1943
9SYH|1|a|U|1944
9SYH|1|a|G|1945
*
9SYH|1|a|C|1961
9SYH|1|a|5MC|1962
9SYH|1|a|U|1963
9SYH|1|a|G|1964

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Y

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2