IL_9T1I_016

3D structure

PDB id

9T1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-RlmE strain, PTC class 8

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9T1I|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T1I_016 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.2072

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9T1I|1|a|A|2459
9T1I|1|a|U|2460
9T1I|1|a|A|2461
*
9T1I|1|a|U|2489
9T1I|1|a|G|2490
9T1I|1|a|U|2491
9T1I|1|a|U|2492
9T1I|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27