IL_9T5X_156

3D structure

PDB id

9T5X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9T5X|1|a|G|2576, 9T5X|1|a|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T5X_156 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.124

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_30722.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

20

Unit IDs

9T5X|1|a|C|2510
9T5X|1|a|U|2511
9T5X|1|a|C|2512
*
9T5X|1|a|G|2574
9T5X|1|a|C|2575
9T5X|1|a|G|2576
9T5X|1|a|A|2577
9T5X|1|a|G|2578

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

NADH-quinone oxidoreductase subunit K

Chain d

Large ribosomal subunit protein uL3

Chain z

Large ribosomal subunit protein bL32