IL_9T6M_111

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9T6M|1|a|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T6M_111 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2331

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9T6M|1|a|C|1319
9T6M|1|a|C|1320
9T6M|1|a|A|1321
9T6M|1|a|A|1322
9T6M|1|a|C|1323
*
9T6M|1|a|G|1331
9T6M|1|a|G|1332
9T6M|1|a|G|1333

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22

Chain s

Large ribosomal subunit protein uL23