IL_9T7H_048

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGCAG*CGG

Length

8 nucleotides

Bulged bases

9T7H|1|1|A|1133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T7H_048 not in the Motif Atlas

Geometric match to IL_6CK5_011

Geometric discrepancy: 0.2343

The information below is about IL_6CK5_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.4

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

9T7H|1|1|U|1130
9T7H|1|1|G|1131
9T7H|1|1|C|1132
9T7H|1|1|A|1133
9T7H|1|1|G|1134
*
9T7H|1|1|C|1149
9T7H|1|1|G|1150
9T7H|1|1|G|1151

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BE

Large ribosomal subunit protein uL5