IL_9T7H_075
3D structure
- PDB id
- 9T7H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGAACU(OMC)GG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T7H_075 not in the Motif Atlas
- Geometric match to IL_9PN5_075
- Geometric discrepancy: 0.0571
- The information below is about IL_9PN5_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.3
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9T7H|1|1|G|1942
9T7H|1|1|G|1943
9T7H|1|1|A|1944
9T7H|1|1|A|1945
9T7H|1|1|C|1946
9T7H|1|1|U|1947
9T7H|1|1|OMC|1948
9T7H|1|1|G|1949
9T7H|1|1|G|1950
*
9T7H|1|1|C|2231
9T7H|1|1|U|2232
9T7H|1|1|G|2233
9T7H|1|1|U|2234
9T7H|1|1|C|2235
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BJ
- Large ribosomal subunit protein uL14
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