IL_9T7H_083

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T7H_083 not in the Motif Atlas

Geometric match to IL_9DFE_074

Geometric discrepancy: 0.1936

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9T7H|1|1|U|2107
9T7H|1|1|G|2108
9T7H|1|1|A|2109
9T7H|1|1|A|2110
9T7H|1|1|G|2111
*
9T7H|1|1|U|2128
9T7H|1|1|G|2129
9T7H|1|1|A|2130
9T7H|1|1|A|2131
9T7H|1|1|G|2132

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2