IL_9T8S_008

3D structure

PDB id

9T8S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain, PTC class 8

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

9T8S|1|a|A|1938, 9T8S|1|a|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T8S|1|a|C|1934
9T8S|1|a|G|1935
9T8S|1|a|A|1936
9T8S|1|a|A|1937
9T8S|1|a|A|1938
9T8S|1|a|5MU|1939
9T8S|1|a|U|1940
9T8S|1|a|C|1941
9T8S|1|a|C|1942
9T8S|1|a|U|1943
9T8S|1|a|U|1944
9T8S|1|a|G|1945
*
9T8S|1|a|C|1961
9T8S|1|a|5MC|1962
9T8S|1|a|U|1963
9T8S|1|a|G|1964

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2