IL_9TEX_127

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

9TEX|1|a|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEX_127 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.1088

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9TEX|1|a|A|1669
9TEX|1|a|C|1670
9TEX|1|a|U|1671
9TEX|1|a|A|1672
9TEX|1|a|G|1673
9TEX|1|a|G|1674
*
9TEX|1|a|C|1990
9TEX|1|a|U|1991
9TEX|1|a|G|1992
9TEX|1|a|U|1993

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14