IL_9TEX_150

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AG*(OMC)CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEX_150 not in the Motif Atlas

Homologous match to IL_7A0S_083

Geometric discrepancy: 0.2391

The information below is about IL_7A0S_083

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

9TEX|1|a|A|2453
9TEX|1|a|G|2454
*
9TEX|1|a|OMC|2498
9TEX|1|a|C|2499
9TEX|1|a|U|2500

Current chains

Chain a

23S rRNA

Nearby chains

Chain 8

Dal2

Chain d

Large ribosomal subunit protein uL3