3D structure

PDB id
9TEY (explore in PDB, NAKB, or RNA 3D Hub)
Description
DalDro bound to the terminating Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9TEY_076 not in the Motif Atlas
Geometric match to IL_8B0X_076
Geometric discrepancy: 0.0451
The information below is about IL_8B0X_076
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_58355.4
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
45

Unit IDs

9TEY|1|V|G|536
9TEY|1|V|G|537
9TEY|1|V|A|538
9TEY|1|V|G|539
*
9TEY|1|V|U|554
9TEY|1|V|G|555
9TEY|1|V|A|556
9TEY|1|V|C|557

Current chains

Chain V
23S rRNA

Nearby chains

Chain i
Large ribosomal subunit protein uL13
Chain p
Large ribosomal subunit protein bL20
Chain q
Large ribosomal subunit protein bL21

Coloring options:


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