IL_9TEZ_019

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEZ_019 not in the Motif Atlas

Geometric match to IL_8B0X_083

Geometric discrepancy: 0.0619

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9TEZ|1|V|U|703
9TEZ|1|V|G|704
9TEZ|1|V|A|705
9TEZ|1|V|A|706
9TEZ|1|V|G|707
*
9TEZ|1|V|U|724
9TEZ|1|V|G|725
9TEZ|1|V|G|726
9TEZ|1|V|A|727
9TEZ|1|V|G|728

Current chains

Chain V

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2