IL_9TI5_049

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

9TI5|1|A|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI5_049 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.1707

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9TI5|1|A|G|1356
9TI5|1|A|G|1357
9TI5|1|A|A|1358
9TI5|1|A|A|1359
9TI5|1|A|G|1360
*
9TI5|1|A|C|1368
9TI5|1|A|G|1369
9TI5|1|A|C|1370

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain W

50S ribosomal protein L23