IL_9TI5_151

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI5_151 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.2102

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_49794.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9TI5|1|a|G|1002
9TI5|1|a|A|1003
9TI5|1|a|C|1004
9TI5|1|a|A|1005
9TI5|1|a|U|1006
*
9TI5|1|a|A|1055
9TI5|1|a|C|1056

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S14 type Z